PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.284270.1
Common NameCsa_5G607470, LOC101209589
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 562aa    MW: 60399.5 Da    PI: 6.5102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.284270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-09378426355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Cucsa.284270.1 378 NSHSLAERVRREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 426
                     58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-16373443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.74E-11373430No hitNo description
PROSITE profilePS5088815.459375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16376442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-6378426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MDIGDRDKFR LESSIEDTIN CSNSMSSDWQ FGETTLTTMP TGLVLPGNVD VVRNQDMVGC  60
SSSTASMVES FSSTIWEQSA HCQNLGISNI QGHNISNTSN IIGISKASGC PVSSSSDIDR  120
TLDISWNLSH NMLKGGVYLP NFPGMLPPSL SQLPADSSFI ERAARLSCFS GGNFGGDVGH  180
FNVPDPVGVF SRGMGVIPER WDEIPRNGLG LASGTGGQSQ RNVVNSESSM PVCLTNEHGA  240
TERDSPKNGS PLKLDGRGKL AVDGSANESD EAECSGGDGL GEPCTLEATG KELSTKGLGT  300
RKRKRSGQKT ELDQANGPLQ QTTVSPKDDA ETQRKRDQNP NSTANKGTGK HGKQASQPSD  360
PPKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQE LVPGCSKVTG KAVMLDEIIN  420
YVQSLQRQVE FLSMKLATVN PRLDINIDGV VAKDILQSRV GPLSTLGFSS HMPVACPPPH  480
ISHHELIPTS FPAIGSSEML RSTMNSHMTP RSGGFKNPSQ IKNVWEGELQ NLVQMSFGMP  540
TPPNCLEVEG SDSSGRTKVE H*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655727.10.0PREDICTED: transcription factor bHLH49 isoform X1
TrEMBLA0A0A0KR060.0A0A0A0KR06_CUCSA; Uncharacterized protein
STRINGPOPTR_0010s14600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-112bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]